PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG064900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 289aa    MW: 31251.3 Da    PI: 4.7246
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG064900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-1389134555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +  +Er RR+r+N+++  Lr+++P+      +K++Ka+i++ A+ YI +Lq
  Pavir.7KG064900.1.p  89 NIVMERDRRRRLNEKLYALRSVVPNI-----TKMDKASIVRDAIAYIEQLQ 134
                          5679*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.01284133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-1686149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.84E-1587138No hitNo description
PfamPF000102.7E-1189134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-1690149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1590139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.4E-4218275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEAADLLSLG FDFYCQSPPR FFDEQDCLAV DDSIVYAPTE AESVTGLYPS YGEREASSSP  60
DGANSCSGQQ VAPPPASPAP AGAATTTKNI VMERDRRRRL NEKLYALRSV VPNITKMDKA  120
SIVRDAIAYI EQLQEEERRV LAEISALESS SGVTAAGVKL KAQDDADSYP WPRKWTRTAP  180
GGSSIDASPP LQILEVQVTE AGEKVAVVSV RCSRGRDAVA KVCRALEPLR LRVVTASIAA  240
AGDAVVHTMF VEIEDKMSGA QLKERVEAAL AQLEVTRCPL KTTRYWED*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3572944e-36AK357294.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1049P14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975233.11e-131PREDICTED: transcription factor bHLH35-like
TrEMBLK3Y9441e-131K3Y944_SETIT; Uncharacterized protein
STRINGSi010736m1e-130(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-44bHLH family protein